I followed this guide:
http://ubuntuforums.org/showthread.php?t=786095 and updated the FFmpeg .. but it didnt fix it.. so i will try the version you asked.. *sigh* i forgot to restart the program, I restarted it and it works really fast now, doh.. thanks for the help.
ffmpeg version git-2011-11-15-7ea3963, Copyright (c) 2000-2011 the FFmpeg developers
built on Nov 15 2011 04:09:50 with gcc 4.6.1
configuration: --enable-gpl --enable-libfaac --enable-libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-libtheora --enable-libvorbis --enable-libx264 --enable-nonfree --enable-postproc --enable-version3 --enable-x11grab --enable-libvpx
libavutil 51. 25. 0 / 51. 25. 0
libavcodec 53. 34. 0 / 53. 34. 0
libavformat 53. 20. 0 / 53. 20. 0
libavdevice 53. 4. 0 / 53. 4. 0
libavfilter 2. 48. 1 / 2. 48. 1
libswscale 2. 1. 0 / 2. 1. 0
libpostproc 51. 2. 0 / 51. 2. 0
Input #0, mov,mp4,m4a,3gp,3g2,mj2, from 'The Pacific Ep 01.mp4':
Metadata:
major_brand : mp42
minor_version : 0
compatible_brands: mp42isomavc1
creation_time : 2010-05-01 18:22:41
encoder : HandBrake 0.9.4 2009112300
Duration: 00:54:44.69, start: 0.000000, bitrate: 1241 kb/s
Stream #0:0(und): Video: h264 (Main) (avc1 / 0x31637661), yuv420p, 720x400 [SAR 713:720 DAR 713:400], 1077 kb/s, 29.97 fps, 29.97 tbr, 90k tbn, 59.94 tbc
Metadata:
creation_time : 2010-05-01 18:22:41
handler_name :
Stream #0:1(und): Audio: aac (mp4a / 0x6134706D), 48000 Hz, stereo, s16, 159 kb/s
Metadata:
creation_time : 2010-05-01 18:22:41
handler_name :
At least one output file must be specified